| 0 | City at War | cover | 1 | pencils: A. C. Farley; inks: A. C. Farley; colors: A. C. Farley | Donatello, Leonardo, Michelangelo, Raphael |
| 1 | - | foreword, introduction, preface, afterword | 1 | script: Peter Laird, Kevin Eastman | |
| 2 | City at War: Part 12 of 13 | comic story | 20 | script: Kevin Eastman, Peter Laird, Jim Lawson; pencils: Jim Lawson; inks: Jason Temujin Minor, Eric Talbot; letters: Mary Kelleher | Donatello, Casey Jones, Karai, Leonardo, Michelangelo, April O'Neil, Raphael |
| 3 | - | promo (ad from the publisher) | 1 | script: Jim Lawson, Peter Laird; pencils: Jim Lawson; inks: Keith Aiken | Donatello, Splinter |
| 4 | - | promo (ad from the publisher) | 1 | pencils: Stan Sakai; inks: Stan Sakai | Space Usagi [Miyamoto Usagi II] |
| 5 | - | promo (ad from the publisher) | 1 | pencils: Stan Sakai; inks: Stan Sakai | Miyamoto Usagi |
| 6 | - | promo (ad from the publisher) | 2 | pencils: Jim Lawson; inks: Steve Lavigne | Donatello, Flaming Carrot, Leonardo, Michelangelo, Raphael |
| 7 | Letters From Our Readers | letters page | 2 | letters: typeset | |
| 8 | Bioneers | promo (ad from the publisher) | 1 | pencils: A. C. Farley; inks: A. C. Farley | |
| 9 | Stupid Heroes | promo (ad from the publisher) | 1 | pencils: Peter Laird; inks: Peter Laird | |
| 10 | - | promo (ad from the publisher) | 1 | pencils: A. C. Farley; inks: A. C. Farley | Leonardo, Michelangelo, Raphael |
| 11 | Mirage Publishing Backstock Sale! | promo (ad from the publisher) | 1 | letters: typeset | |
| 12 | - | promo (ad from the publisher) | 1 | pencils: Michael Dooney; inks: Erik Larsen | Donatello, Dragon, Kurr, Leonardo, Michelangelo, Raphael |
| 13 | - | credits, title page | 1 | letters: typeset | |
| 14 | Xenotech | promo (ad from the publisher) | 1 | pencils: Michael Dooney | |