| 0 | - | cover | 1 | pencils: Paul Ryan; inks: Paul Ryan | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]]; Kristoff Vernard |
| 1 | Epic Collection | promo (ad from the publisher) | 1 | letters: typeset | |
| 2 | Fantastic Four: Atlantis Rising | credits, title page | 2 | letters: typeset | |
| 3 | Atlantis Rising | table of contents | 1 | letters: typeset | |
| 4 | Hope Strings Eternal | cover reprint (on interior page) | 1 | pencils: Paul Ryan; inks: Paul Ryan | Puppet Master; Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]; Mr. Fantastic [Reed Richards]]; Alicia Masters |
| 5 | Days of Recent Past | comic story | 6 | script: Paul Ryan, Tom DeFalco; pencils: Paul Ryan; inks: Dan Bulanadi; colors: John Kalisz; letters: Jeff Powell | Ant-Man [Scott Lang]; Human Torch [Johnny Storm] (flashback); The Thing [Ben Grimm] (flashback); Invisible Woman [Sue Storm Richards] (flashback); Lyja the Laserfist (flashback); Alicia Masters (flashback); She-Hulk (flashback); Paibok the Power Skrull (flashback); Devos the Devastator (flashback); |
| 6 | Choices | comic story | 16 | script: Tom DeFalco; pencils: Paul Ryan; inks: Dan Bulanadi; colors: John Kalisz; letters: Steve Dutro | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]]; Puppet Master; Dean Hastings; Bridget O'Neil; Alicia Masters; Nathaniel Richards [as Doctor Doom] |
| 7 | Marvel Year-In-Review '93 Parody Ad | illustration | 1 | script: Clay Griffith; pencils: Manny Galan; inks: Gregory Wright | Nick Fury, Ben Grimm, Logan, The Thing, Wolverine |
| 8 | A Dark Shadow From the Past! | cover reprint (on interior page) | 1 | pencils: Paul Ryan; inks: Paul Ryan | Bridget O'Neil; She-Hulk; Human Torch [Johnny Storm]; Wyatt Wingfoot |
| 9 | The Day of Its Return | comic story | 22 | script: Tom DeFalco, Mike Lackey; pencils: Paul Ryan; inks: Dan Bulanadi; colors: John Kalisz; letters: Steve Dutro | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]; Lyja the Laserfist]; Wyatt Wingfoot; Bridget O'Neil; She-Hulk; Professor Simon Jansen; Chief Stalking Fox; Alicia Masters; Roberta the Receptionist; Ant-Man [Scott Lang]; Raptor the Renegade; Nat |
| 10 | Payback! | cover reprint (on interior page) | 1 | pencils: Paul Ryan; inks: Paul Ryan | The Thing; Wolverine |
| 11 | Payback! | comic story | 22 | script: Paul Ryan, Tom DeFalco; pencils: Paul Ryan; inks: Dan Bulanadi; colors: Kraiger, Kalisz, Joe Caponsacco; letters: Dutro, Jeff Powell | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]; Lyja the Laserfist]; Wolverine; Mad Thinker; Ant-Man [Scott Lang]; She-Hulk; Bridget O'Neil; Professor Simon Jansen; Nathaniel Richards; F4 [Super Android created by the Mad Thinker] |
| 12 | Doomquest! | cover reprint (on interior page) | 1 | pencils: Paul Ryan; inks: Paul Ryan | Invisible Woman |
| 13 | In Search of Doom! | comic story | 22 | script: Tom DeFalco; pencils: Paul Ryan; inks: Dan Bulanadi; colors: John Kalisz; letters: Steve Dutro | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]; Lyja the Laserfist]; Nathaniel Richards; Ant-Man [Scott Lang]; Uatu the Watcher; Dark Raider |
| 14 | Fantastic Four/Inhumans: Atlantis Rising TPB Cover | cover reprint (on interior page) | 1 | pencils: M. C. Wyman; inks: Rey Garcia; colors: Chris Sotomayor | Fantastic Four [Thing [Ben Grimm]; Human Torch [Johnny Storm]; Invisible Woman [Sue Storm Richards]]; Morgan Le Fey; Black Bolt; Medusa; Kristoff; Nathaniel Richards |
| 15 | How Can the Fantastic Four Survive ... ... A Watcher's Wrath? | cover reprint (on interior page) | 1 | pencils: Paul Ryan; inks: Danny Bulanadi | Aron the Rogue Watcher; Ant-Man [Scott Lang]; Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]] |
| 16 | Resurrection! | comic story | 22 | script: Tom DeFalco, Paul Ryan; pencils: Paul Ryan; inks: Dan Bulanadi; colors: John Kalisz; letters: John Costanza | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]; Lyja the Laserfist]; Ant-Man [Scott Lang]; Uatu the Watcher; Nathaniel Richards; Aron the Rogue Watcher; Kristoff Vernard; Zarrko [as Boris]; Dark Raider |
| 17 | Be Witness to "Watchers Lie!" | cover reprint (on interior page) | 1 | pencils: Paul Ryan; inks: Danny Bulanadi | Aron the Rogue Watcher; Kristoff Vernard; Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]] |
| 18 | Watchers Lie! | comic story | 22 | script: Tom DeFalco, Paul Ryan; pencils: Paul Ryan; inks: Dan Bulanadi; colors: John Kalisz; letters: Jim Novak, Jack Morelli | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]]; Nathaniel Richards; Kristoff Vernard; Zarrko [as Boris]; Ant-Man [Scott Lang]; General Ator; Uatu the Watcher; Rootar the Irresistible; Eelak the Agile; Margoyle; Glaboo; Pulssus; Aron the Rogue |
| 19 | Reed and Sue Death-struggle in the Negative Zone?! | cover reprint (on interior page) | 1 | pencils: Paul Ryan; inks: Danny Bulanadi | Aron the Rogue Watcher; Invisible Woman; Mister Fantastic |
| 20 | Watchers Scheme! | comic story | 22 | script: Tom DeFalco, Paul Ryan; pencils: Paul Ryan; inks: Dan Bulanadi; colors: John Kalisz; letters: Jim Novak | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]]; Aron the Rogue Watcher; Kristoff Vernard; Ant-Man [Scott Lang]; General Ator; Rootar the Irresistible; Eelak the Agile; Margoyle; Glaboo; Pulssus; Zarrko [as Boris]; Nathaniel Richards |
| 21 | Mission in the Negative Zone! To Save Sue Richards! | cover reprint (on interior page) | 1 | pencils: Dante Bastianoni; inks: Dante Bastianoni | Huntara [Tara Richards]; Invisible Woman |
| 22 | The Masque of Doom | comic story | 22 | script: Tom Brevoort, Mike Kanterovich; pencils: Dante Bastianoni; inks: Ralph Cabrera; colors: John Kalisz; letters: John Workman | Fantastic Force [Psi-Lord [Franklin Richards]; Huntara [Tara Richards]; Devlor; Vibraxas]; Lyja; Nathaniel Richards; Kristoff; Invisible Woman; Watchers; Celestials |
| 23 | Fantastic Four #400 | cover reprint (on interior page) | 1 | pencils: Paul Ryan; inks: Paul Ryan | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]]; Kristoff Vernard |
| 24 | Table of Contents | table of contents | 1 | letters: typeset | |
| 25 | Introduction | foreword, introduction, preface, afterword | 1 | script: Stan Lee | |
| 26 | Even the Watchers Can Die! | comic story | 40 | script: Tom DeFalco, Paul Ryan; pencils: Paul Ryan; inks: Dan Bulanadi; colors: John Kalisz; letters: Jim Novak | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]; Lyja the Laserfist]; Huntara; Vibraxas; Kristoff Vernard; Ant-Man [Scott Lang]; Psi-Lord [Franklin Richards]; Aron the Rogue Watcher; Devlor; Uatu the Watcher; The Celestials; The One; Extar; Ari |
| 27 | Defending a Title | text article | 3 | script: Michael Marts | |
| 28 | In Memoriam! | comic story | 6 | script: Tom DeFalco, Paul Ryan; pencils: Paul Ryan; inks: Dan Bulanadi; colors: Scott Marshall; letters: Brad Joyce | Nick Fury; Iron Man [Tony Stark]; Quicksilver; Silver Surfer; Thor; Namor, the Sub-Mariner; Thunderstrike; Black Panther; Spider-Man [Peter Parker]; Silver Sable; Ant-Man [Scott Lang]; Captain America [Steve Rogers]; She-Hulk; Huntara; Lyja the Lazerfist; Human Torch; Zarrko [as Boris]; Kristoff Ver |
| 29 | Fantastic Four: Atlantis Rising #1 | cover reprint (on interior page) | 3 | pencils: M. C. Wyman; inks: Rey Garcia; colors: Mike Rockwitz | Fantastic Four [Thing [Ben Grimm]; Human Torch [Johnny Storm]; Invisible Woman [Sue Storm Richards]]; Namor, the Sub-Mariner; Thor; Triton; Morgan Le Fey |
| 30 | -- Atlantis Is Rising! | comic story | 46 | script: Tom DeFalco, Glenn Herdling; pencils: M. C. Wyman; inks: Rey Garcia, Don Hudson, Geof Isherwood, Kevin Yates; colors: Mike Rockwitz; letters: Chris Eliopoulos | Fantastic Four [Thing [Ben Grimm]; Human Torch [Johnny Storm]; Invisible Woman [Sue Storm Richards]]; Nathaniel Richards; Morgan Le Fey; Triton; Namor, The Sub-Mariner; Sean Dolan; Prince Llyron; Laura Green; Ant-Man [Scott Lang]; Black Panther (cameo); Inhumans; Sapphiras; Cynas; Arcadius; General |
| 31 | Cruel and Inhuman Assault! | cover reprint (on interior page) | 1 | pencils: Dante Bastianoni; inks: Dante Bastianoni | Fantastic Force [Psi-Lord [Franklin Richards]; Devlor]; Crimson Cadre |
| 32 | Cruel and Inhuman Punishment (Atlantis Rising Part Two) | comic story | 22 | script: Tom Brevoort, Mike Kanterovich; pencils: Dante Bastianoni; inks: Ralph Cabrera; colors: John Kalisz; letters: John Workman | Fantastic Force [Psi-Lord [Franklin Richards]; Huntara [Tara Richards]; Devlor; Vibraxas]; Crimson Cadre |
| 33 | As the Torch Burns So Shall the F.F. Perish! | cover reprint (on interior page) | 1 | pencils: Paul Ryan; inks: Paul Ryan | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]; Ant-Man [Scott Lang]; Kristoff Vernard] |
| 34 | At the Mercy of Maximus! | comic story | 22 | script: Paul Ryan, Tom DeFalco; pencils: Paul Ryan; inks: Dan Bulanadi; colors: John Kalisz; letters: Jim Novak | Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]; Kristoff Vernard; Ant-Man [Scott Lang]]; Mister Fantastic (flashback); Zarrko [as Boris]; Morgan LeFey; Thor; Namor, the Sub-Mariner; Nathaniel Richards; Inhumans [Maximus; Stallior; Timberius; K |
| 35 | Family Affair! The Human Torch vs Psi-Lord! | cover reprint (on interior page) | 1 | pencils: Dante Bastianoni | Psi-Lord [Franklin Richards] |
| 36 | The Torch Is Passed | comic story | 22 | script: Tom Brevoort, Mike Kanterovich; pencils: Geof Isherwood; inks: Ralph Cabrera, Sam de la Rosa; colors: John Kalisz; letters: John Workman | Fantastic Force [Psi-Lord [Franklin Richards]; Huntara [Tara Richards]; Devlor; Vibraxas]; Lyja; Nathaniel Richards; Human Torch [Johnny Storm]; Thor; Triton |
| 37 | Thor Hammers Fan 4! | cover reprint (on interior page) | 1 | pencils: Paul Ryan; inks: Danny Bulanadi | The Thing; Thor |
| 38 | By Our Friends, Besieged--! | comic story | 22 | script: Tom DeFalco, Paul Ryan; pencils: Paul Ryan; inks: Dan Bulanadi; colors: John Kalisz; letters: Jim Novak | Fantastic Four [The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]; Ant-Man [Scott Lang]; Kristoff Vernard]; Zarrko [as Boris]; Thor; Morgan LeFey; Nathaniel Richards; Inhumans [Medusa; Gorgon; Karnak; Ahura; Black Bolt; Arcadius; Lockjaw; Triton]; Namor, the Sub-Mariner; Lord Vashti; Admir |
| 39 | Sales to Astonish: April 1995 Cover | cover reprint (on interior page) | 1 | pencils: Dennis Calero; inks: Dennis Calero; colors: Dennis Calero | |
| 40 | Fantastic Four: Atlantis Rising #2 | cover reprint (on interior page) | 3 | pencils: M. C. Wyman; inks: Rey Garcia; colors: Mike Rockwitz | Fantastic Four [Thing [Ben Grimm]; Human Torch [Johnny Storm]; Invisible Woman [Sue Storm Richards]]; Morgan Le Fey; Black Bolt; Medusa; Kristoff; Nathaniel Richards |
| 41 | Assault on Atlantis | comic story | 48 | script: Tom DeFalco, Glenn Herdling; pencils: M. C. Wyman, Geof Isherwood; inks: Rey Garcia, Herb Trimpe, Don Hudson, Sandu Florea; colors: Mike Rockwitz; letters: Chris Eliopoulos | Fantastic Four [Thing [Ben Grimm]; Mr. Fantastic [Reed Richards]; Human Torch [Johnny Storm]; Invisible Woman [Sue Storm Richards]]; Namor, The Sub-Mariner; Ant-Man [Scott Lang]; Thor; Kristoff; Morgan Le Fey; Cynas; Targon; Arcadius; Nathaniel Richards; Furgar; Sapphiras; Medusa; Gorgon; Lockjaw; K |
| 42 | "Atlantis Rising" Contest Announcement Page | promo (ad from the publisher) | 1 | letters: typeset | |
| 43 | Fantastic Four: Atlantis Rising Collectors' Preview #1 | cover reprint (on interior page) | 2 | pencils: Alan Davis; inks: Alan Davis; colors: Joe Caponsacco | Human Torch; Thing; Invisible Woman; Ant-Man; Namor The Sub-Mariner; Triton; Adam Warlock; The Infinity Watch; Inhumans; Fantastic Force; Nathaniel Richards |
| 44 | Beyond the Blue Event Horizon | text article | 0.5 | script: Steve Saffel | |
| 45 | Credits | credits, title page | 0.5 | letters: typeset | |
| 46 | Contents | table of contents | 1 | letters: typeset | Galactus |
| 47 | The Atlantis Crossing | text article | 6 | script: Anya Martin | |
| 48 | Geographic Isolation | text article | 2 | script: Jay Franco | |
| 49 | What a Long Strange Trip It's Been | text article | 5 | script: Philip Nutman | |
| 50 | How to Make Toys the Marvel Way | text article | 7 | script: Brian David-Marshall | |
| 51 | Avalon Rising | text article | 2 | script: Sholly Fisch | |
| 52 | A Tale of Two Dooms | text article | 2 | script: Darren Dean | |
| 53 | Marvels Top 10 Monsters | text article | 4 | letters: typeset | Zzutak; Monstrollo; Pildorr the Plunderer; Taboo; Oog; Rorgg King of the Spider-Men; The Green Thing; Orrgo the Unconquerable; Manoo; Googam Son of Goom |
| 54 | The Hour Is At Hand | text article | 4 | script: Doug Murray | |
| 55 | Marvel Swimsuit Special #3 | cover reprint (on interior page) | 1 | pencils: Adam Hughes; inks: Adam Hughes; colors: Adam Hughes | |
| 56 | Framing Story | comic story | 4 | script: Rob Tokar; pencils: Steven Butler, Joe Phillips, Gary Barker; inks: Sam de la Rosa, John Dell, Michael Kraiger; colors: Tom Smith, Jung Choi | |
| 57 | - | illustration | 1 | script: Rob Tokar; pencils: Scott Benefiel; inks: Jasen Rodriguez; colors: Tom Smith | |
| 58 | Fantastic Four #398 Foil Variant | cover reprint (on interior page) | 0.25 | pencils: Paul Ryan; inks: Danny Bulanadi | Aron the Rogue Watcher; Kristoff Vernard; Fantastic Four [Human Torch [Johnny Storm]; The Thing [Ben Grimm]; Invisible Woman [Sue Storm Richards]] |
| 59 | Fantastic Four #399 Foil Variant | cover reprint (on interior page) | 0.25 | pencils: Paul Ryan; inks: Danny Bulanadi | Aron the Rogue Watcher; Invisible Woman; Mister Fantastic |
| 60 | Fantastic Four #394 Deluxe Bagged Edition | cover reprint (on interior page) | 0.25 | pencils: Paul Ryan; inks: Paul Ryan | Bridget O'Neil; She-Hulk; Human Torch [Johnny Storm]; Wyatt Wingfoot |
| 61 | Fantastic Four #400 Cover Preview | cover reprint (on interior page) | 0.25 | pencils: Paul Ryan; inks: Paul Ryan | |
| 62 | Fantastic Four: Atlantis Rising Collectors' Preview #1 Cover Art | illustration | 1 | pencils: Alan Davis; inks: Alan Davis | |
| 63 | Afterword | foreword, introduction, preface, afterword | 1 | script: Ralph Macchio | |
| 64 | Epic Collection | promo (ad from the publisher) | 1 | letters: typeset | |
| 65 | The Fantastic Four Reunite -- and Everything Falls Apart! | promo (ad from the publisher) | 1 | letters: typeset | |