| 0 | - | cover | 1 | pencils: Dan Duncan; inks: Dan Duncan; colors: Dan Duncan | |
| 1 | - | credits, title page | 4 | letters: typeset | |
| 2 | - | table of contents | 2 | letters: typeset | |
| 3 | Teenage Mutant Ninja Turtles #67 Cover | cover reprint (on interior page) | 1 | pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Mateus Santolouco | |
| 4 | Desperate Measures, Part 1 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Ronda Pattison; letters: Shawn Lee, Chris Mowry | Alex Winter; Donatello; John Bishop; Leonardo; Michelangelo; Mondo Gecko; Pigeon Pete; Raphael; T.J. Shevlin; Slash; Splinter; Wesley Knight; Herman; Lindsey Baker; Man Ray; Old Hob; Sally Pride; Seymour Gutz |
| 5 | Teenage Mutant Ninja Turtles #67 Karl Moline Variant Cover | cover reprint (on interior page) | 1 | pencils: Karl Moline; inks: Karl Moline; colors: Karl Moline | |
| 6 | Teenage Mutant Ninja Turtles #68 Cover | cover reprint (on interior page) | 1 | pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Mateus Santolouco | |
| 7 | Desperate Measures, Part 2 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Ronda Pattison; letters: Shawn Lee | Donatello; John Bishop; Leonardo; Man Ray; Michelangelo; Mondo Gecko; Old Hob; Raphael; Sally Pride; T.J. Shevlin; Wesley Knight; Alex Winter; Lindsey Baker; Pigeon Pete |
| 8 | Teenage Mutant Ninja Turtles #68 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman | |
| 9 | Teenage Mutant Ninja Turtles #69 Cover | cover reprint (on interior page) | 1 | pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Mateus Santolouco | |
| 10 | Desperate Measures, Part 3 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Ronda Pattison; letters: Shawn Lee | Alex Winter; Wesley Knight; Donatello; Hanson; John Bishop; Slash; T.J. Shevlin; Leonardo; Michelangelo; Mondo Gecko; Old Hob; Pete; Sally Pride; Raphael; Angie Starks; Charlie; Kara Lewis; Pepperoni; Ralph; Wayne Bishop |
| 11 | Teenage Mutant Ninja Turtles #69 Nick Roche Variant Cover | cover reprint (on interior page) | 1 | pencils: Nick Roche; inks: Nick Roche | |
| 12 | Teenage Mutant Ninja Turtles #70 Cover | cover reprint (on interior page) | 1 | pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Mateus Santolouco | |
| 13 | Desperate Measures, Part 4 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Ronda Pattison; letters: Shawn Lee | John Bishop; Dark Water; Alex Winter; Wesley Knight; Donatello; Old Hob; Leonardo; Michelangelo; Mondo Gecko; Sally Pride; Slash; Wayne Bishop; Lindsey Baker; Seymour Gutz; Herman the Hermit Crab; Pam Knight; Man Ray; Pigeon Pete; T.J. Shevlin |
| 14 | Teenage Mutant Ninja Turtles #70 Chris Johnson Variant Cover | cover reprint (on interior page) | 1 | pencils: Chris Johnson; inks: Chris Johnson; colors: Mark Englert | |
| 15 | Teenage Mutant Ninja Turtles Universe #9 Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II; colors: Freddie Williams II | |
| 16 | Toad Baron's Ball, Part 1 | comic story | 20 | script: Sophie Campbell, Bobby Curnow; pencils: Pablo Tunica; inks: Pablo Tunica; colors: Pablo Tunica; letters: Shawn Lee | Alopex; Angel Bridge; Toad Baron |
| 17 | Teenage Mutant Ninja Turtles Universe #9 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Pablo Tunica; inks: Pablo Tunica; colors: Pablo Tunica | |
| 18 | Teenage Mutant Ninja Turtles Universe #10 Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II; colors: Jeremy Colwell | |
| 19 | Toad Baron's Ball, Part 2 | comic story | 20 | script: Sophie Campbell, Bobby Curnow; pencils: Pablo Tunica; inks: Pablo Tunica; colors: Pablo Tunica; letters: Shawn Lee | Alopex; Angel Bridge; Toad Baron; Tony Bennett; Leonardo; Michelangelo; Pepperoni; Raphael; Shredder |
| 20 | Teenage Mutant Ninja Turtles Universe #10 Sophie Campbell Variant Cover | cover reprint (on interior page) | 1 | pencils: Sophie Campbell; inks: Sophie Campbell; colors: Sophie Campbell | |
| 21 | Teenage Mutant Ninja Turtles #71 Cover | cover reprint (on interior page) | 1 | pencils: Dave Wachter; inks: Dave Wachter; colors: Dave Wachter | |
| 22 | Pantheon Family Reunion, Part 1 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Dave Watcher; inks: Dave Watcher; colors: Ronda Pattison; letters: Shawn Lee | Aka; Gothano; Jagwar; Kitsune; Manmoth; Rat King; Toad Baron; Alberto; Bob; Donatello; Franz; Leonardo; Michelangelo; Raphael; Alopex; Angel Bridge; Chi-You; Dragon |
| 23 | Teenage Mutant Ninja Turtles #71 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman | |
| 24 | Teenage Mutant Ninja Turtles #72 Cover | cover reprint (on interior page) | 1 | pencils: Dave Wachter; inks: Dave Wachter; colors: Dave Wachter | |
| 25 | Pantheon Family Reunion, Part 2 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Dave Wachter; inks: Dave Wachter; colors: Ronda Pattison; letters: Shawn Lee | Aka; Angel Bridge; April O'Neil; Baxter Stockman; Donatello; Jagwar; Kitsune; Leonardo; Manmoth; Michelangelo; Raphael; Rat King; Toad Baron; Alopex |
| 26 | Teenage Mutant Ninja Turtles #72 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman | |
| 27 | Teenage Mutant Ninja Turtles/Usagi Yojimbo Cover | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth | Donatello, Jei, Leonardo, Michelangelo, Miyamoto Usagi, Raphael |
| 28 | Namazu or the Big Fish Story | comic story | 40 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; letters: Stan Sakai | Donatello, Jei, Leonardo, Michelangelo, Miyamoto Usagi, Raphael, Sasuké |
| 29 | Teenage Mutant Ninja Turtles/Usagi Yojimbo David Petersen Variant Cover | cover reprint (on interior page) | 1 | pencils: David Petersen; inks: David Petersen; colors: David Petersen | Donatello, Leonardo, Michelangelo, Miyamoto Usagi, Raphael |
| 30 | Teenage Mutant Ninja Turtles Universe #11 Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II; colors: Freddie Williams II | |
| 31 | The Jersey Devil | comic story | 24 | script: Rich Douek; pencils: Aaron Conley; inks: Aaron Conley; colors: Tríona Farrell; letters: Shawn Lee | Dreadmon; Deadaim; Fist; Lynch; Waster; Man Ray; Sally Pride; Null |
| 32 | Teenage Mutant Ninja Turtles Universe #11 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Aaron Conley; inks: Aaron Conley; colors: Jean-François Beaulieu | |
| 33 | Teenage Mutant Ninja Turtles Universe #12 Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II; colors: Freddie Williams II | |
| 34 | Karai's Path, Part 1 | comic story | 20 | script: Erik Burnham, Sophie Campbell; pencils: Sophie Campbell; inks: Sophie Campbell; colors: Brittany Peer; letters: Shawn Lee | Bludgeon; Hayashi Toru; Koya; Natsu; Oroku Karai; Toshiro |
| 35 | Teenage Mutant Ninja Turtles Universe #12 Sophie Campbell Variant Cover | cover reprint (on interior page) | 1 | pencils: Sophie Campbell; inks: Sophie Campbell; colors: Sophie Campbell | |
| 36 | Teenage Mutant Ninja Turtles Universe #13 Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II; colors: Freddie Williams II | |
| 37 | Karai's Path, Part 2 | comic story | 20 | script: Erik Burnham, Sophie Campbell; pencils: Sophie Campbell; inks: Sophie Campbell; colors: Brittany Peer; letters: Shawn Lee | Bludgeon; Dragon; Koya; Oroku Karai; Chi-You; Hayashi Toru; Kublai Khan; Natsu; Toshiro |
| 38 | Teenage Mutant Ninja Turtles Universe #13 Becky Cloonan Variant Cover | cover reprint (on interior page) | 1 | pencils: Becky Cloonan; inks: Becky Cloonan; colors: Becky Cloonan | |
| 39 | Teenage Mutant Ninja Turtles Universe #14 Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II; colors: Jeremy Colwell | |
| 40 | Karai's Path, Part 3 | comic story | 20 | script: Erik Burnham, Sophie Campbell; pencils: Sophie Campbell; inks: Sophie Campbell; colors: Brittany Peer; letters: Shawn Lee | Bludgeon; Koya; Natsu; Ocho; Oroku Karai; Toshiro; Hayashi Toru |
| 41 | Teenage Mutant Ninja Turtles Universe #14 Sophie Campbell Variant Cover | cover reprint (on interior page) | 1 | pencils: Sophie Campbell; inks: Sophie Campbell; colors: Sophie Campbell | |
| 42 | Teenage Mutant Ninja Turtles Universe #15 Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II; colors: Jeremy Colwell | |
| 43 | Karai's Path, Part 4 | comic story | 20 | script: Erik Burnham, Sophie Campbell; pencils: Sophie Campbell; inks: Sophie Campbell; colors: Brittany Peer; letters: Shawn Lee | Bludgeon; Hayashi Toru; Koya; Natsu; Ocho; Oroku Karai; Toshiro |
| 44 | Teenage Mutant Ninja Turtles Universe #15 Sophie Campbell Variant Cover | cover reprint (on interior page) | 1 | pencils: Sophie Campbell; inks: Sophie Campbell; colors: Sophie Campbell | |
| 45 | Teenage Mutant Ninja Turtles Universe #13 Sophie Campbell Variant Cover | cover reprint (on interior page) | 1 | pencils: Sophie Campbell; inks: Sophie Campbell; colors: Sophie Campbell | |
| 46 | Prey, Part 1 | comic story | 4 | script: Sophie Campbell; pencils: Sophie Campbell; inks: Sophie Campbell; colors: Sophie Campbell; letters: Sophie Campbell | Koya |
| 47 | Prey, Part 2 | comic story | 4 | script: Sophie Campbell; pencils: Sophie Campbell; inks: Sophie Campbell; colors: Sophie Campbell; letters: Sophie Campbell | Bludgeon; Koya |
| 48 | Prey, Part 3 | comic story | 4 | script: Sophie Campbell; pencils: Sophie Campbell; inks: Sophie Campbell; colors: Sophie Campbell; letters: Sophie Campbell | Bludgeon; Koya; Ocho |
| 49 | Prey, Part 4 | comic story | 4 | script: Sophie Campbell; pencils: Sophie Campbell; inks: Sophie Campbell; colors: Sophie Campbell; letters: Sophie Campbell | Bludgeon; Koya; Ocho |
| 50 | Teenage Mutant Ninja Turtles Universe #14 Leila del Duca Variant Cover | cover reprint (on interior page) | 1 | pencils: Leila del Duca; inks: Leila del Duca; colors: Leila del Duca | |
| 51 | Teenage Mutant Ninja Turtles Universe #15 Kaori Matsuo Variant Cover | cover reprint (on interior page) | 1 | pencils: Kaori Matsuo; inks: Kaori Matsuo; colors: Kaori Matsuo | |
| 52 | Teenage Mutant Ninja Turtles #71 Dylan Burnett Variant Cover | cover reprint (on interior page) | 1 | pencils: Dylan Burnett; inks: Dylan Burnett; colors: Dylan Burnett | |
| 53 | Teenage Mutant Ninja Turtles #69 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman | |
| 54 | Teenage Mutant Ninja Turtles #71 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman | |
| 55 | - | illustration | 2 | letters: typeset | |
| 56 | - | illustration | 1 | letters: typeset | |