| 0 | - | cover | 1 | pencils: Rafael Albuquerque; inks: Rafael Albuquerque; colors: Rafael Albuquerque | |
| 1 | - | credits, title page | 4 | letters: typeset | |
| 2 | Teenage Mutant Ninja Turtles: Alpha Cover | cover reprint (on interior page) | 1 | pencils: Chris Burnham; inks: Chris Burnham; colors: Brian Reber | |
| 3 | Long Way from Home | comic story | 10 | script: Jason Aaron; pencils: Chris Burnham; inks: Chris Burnham; colors: Brian Reber; letters: Nathan Widick | Donatello |
| 4 | Teenage Mutant Ninja Turtles: Alpha Vincenzo Federici Variant Cover | cover reprint (on interior page) | 1 | pencils: Vincenzo Federici; inks: Vincenzo Federici; colors: Vincenzo Federici | |
| 5 | Teenage Mutant Ninja Turtles #1 Joëlle Jones Variant Cover | cover reprint (on interior page) | 1 | pencils: Joëlle Jones; inks: Joëlle Jones; colors: Luis Antonio Delgado | |
| 6 | Return to New York, Part One: Teenage Mutant Ninja Inmate | comic story | 22 | script: Jason Aaron; pencils: Joëlle Jones; inks: Joëlle Jones; colors: Ronda Pattison; letters: Shawn Lee | Raphael; Carmichael; Donatello; Hale; Leonardo; Michelangelo |
| 7 | Teenage Mutant Ninja Turtles #1 Cover | cover reprint (on interior page) | 1 | pencils: Rafael Albuquerque; inks: Rafael Albuquerque; colors: Rafael Albuquerque | |
| 8 | Teenage Mutant Ninja Turtles #2 Cover | cover reprint (on interior page) | 1 | pencils: Rafael Albuquerque; inks: Rafael Albuquerque; colors: Rafael Albuquerque | |
| 9 | Return to New York, Part Two: Super Mutant Turtle Power Go! | comic story | 22 | script: Jason Aaron; pencils: Rafael Albuquerque; inks: Rafael Albuquerque; colors: Marcelo Maiolo; letters: Shawn Lee | Michelangelo; Raphael; Donatello; Leonardo |
| 10 | Teenage Mutant Ninja Turtles #2 Geoff Shaw Variant Cover | cover reprint (on interior page) | 1 | pencils: Geoff Shaw; inks: Geoff Shaw; colors: Geoff Shaw | |
| 11 | Teenage Mutant Ninja Turtles #3 Cliff Chiang Variant Cover | cover reprint (on interior page) | 1 | pencils: Cliff Chiang; inks: Cliff Chiang; colors: Cliff Chiang | |
| 12 | Return to New York, Part Three: The Way of the Ganges Mud Turtle | comic story | 22 | script: Jason Aaron; pencils: Cliff Chiang; inks: Cliff Chiang; colors: Cliff Chiang; letters: Shawn Lee | Michelangelo; Raphael; Leonardo |
| 13 | Teenage Mutant Ninja Turtles #3 Cover | cover reprint (on interior page) | 1 | pencils: Rafael Albuquerque; inks: Rafael Albuquerque; colors: Rafael Albuquerque | |
| 14 | Teenage Mutant Ninja Turtles #4 Chris Burnham Variant Cover | cover reprint (on interior page) | 1 | pencils: Chris Burnham; inks: Chris Burnham; colors: Brian Reber | |
| 15 | Return to New York, Part Four: Grit & A Stick | comic story | 22 | script: Jason Aaron; pencils: Chris Burnham; inks: Chris Burnham; colors: Brian Reber; letters: Shawn Lee | Michelangelo; Raphael; Leonardo; Donatello; Hale |
| 16 | Teenage Mutant Ninja Turtles #4 Cover | cover reprint (on interior page) | 1 | pencils: Rafael Albuquerque; inks: Rafael Albuquerque; colors: Rafael Albuquerque | |
| 17 | Teenage Mutant Ninja Turtles #5 Cover | cover reprint (on interior page) | 1 | pencils: Javier Fernández; inks: Javier Fernández; colors: Patricio Delpeche | |
| 18 | Return to New York, Part Five: The Law of the Foot | comic story | 22 | script: Jason Aaron; pencils: Darick Robertson; inks: Norm Rapmund, Darick Robertson; colors: Tony Aviña; letters: Shawn Lee | Michelangelo; Raphael; Leonardo; Donatello; Casey Jones; Bebop; Oroku Karai; Rocksteady; Mr. Hale; Mrs. Hale |
| 19 | Teenage Mutant Ninja Turtles #5 Darick Robertson Variant Cover | cover reprint (on interior page) | 1 | pencils: Darick Robertson; inks: Darick Robertson; colors: Darick Robertson | |
| 20 | Teenage Mutant Ninja Turtles #6 Juan Ferreyra Variant Cover | cover reprint (on interior page) | 1 | pencils: Juan Ferreyra; inks: Juan Ferreyra; colors: Juan Ferreyra | |
| 21 | Return to New York, Part Six: Four Busted Knuckles | comic story | 22 | script: Jason Aaron; pencils: Juan Ferreyra; inks: Juan Ferreyra; colors: Juan Ferreyra; letters: Shawn Lee | Michelangelo; Raphael; Leonardo; Donatello; Casey Jones; Hieronymus Hale; Splinter; April O'Neil |
| 22 | Teenage Mutant Ninja Turtles #6 Cover | cover reprint (on interior page) | 1 | pencils: Jorge Fornés; inks: Jorge Fornés; colors: Jorge Fornés | |
| 23 | Teenage Mutant Ninja Turtles #1 Kevin Eastman Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Fahriza Kamaputra | |
| 24 | Teenage Mutant Ninja Turtles #2 Kevin Eastman & Freddie E. Williams II Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Kevin Eastman, Freddie E. Williams II; inks: Kevin Eastman, Freddie E. Williams II; colors: Kevin Eastman, Freddie E. Williams II | |
| 25 | Teenage Mutant Ninja Turtles #3 Kevin Eastman Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Fahriza Kamaputra | |
| 26 | Teenage Mutant Ninja Turtles #4 Kevin Eastman Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Fahriza Kamaputra | |
| 27 | Teenage Mutant Ninja Turtles #5 Kevin Eastman Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Kevin Eastman | |
| 28 | Teenage Mutant Ninja Turtles #6 Kevin Eastman Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Fahriza Kamaputra | |
| 29 | Teenage Mutant Ninja Turtles #5 J. Gonzo Variant Cover | cover reprint (on interior page) | 0.25 | pencils: J. Gonzo; inks: J. Gonzo; colors: J. Gonzo | |
| 30 | Teenage Mutant Ninja Turtles #5 Darick Robertson & Diego Rodriguez Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Darick Robertson; inks: Darick Robertson; colors: Diego Rodriguez | |
| 31 | Teenage Mutant Ninja Turtles J. Gonzo Connecting Cover | cover reprint (on interior page) | 2 | pencils: J. Gonzo; inks: J. Gonzo; colors: J. Gonzo | |
| 32 | Teenage Mutant Ninja Turtles Danny Earls Connecting Cover | cover reprint (on interior page) | 2 | pencils: Danny Earls; inks: Danny Earls; colors: Jão Canola | |
| 33 | Teenage Mutant Ninja Turtles Darick Robertson Connecting Cover | cover reprint (on interior page) | 2 | pencils: Darick Robertson; inks: Darick Robertson; colors: Diego Rodriguez | |
| 34 | Teenage Mutant Ninja Turtles #1 Lee Bermejo Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Lee Bermejo; inks: Lee Bermejo; colors: Lee Bermejo | |
| 35 | Teenage Mutant Ninja Turtles #2 Lee Bermejo Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Lee Bermejo; inks: Lee Bermejo; colors: Lee Bermejo | |
| 36 | Teenage Mutant Ninja Turtles #3 Lee Bermejo Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Lee Bermejo; inks: Lee Bermejo; colors: Lee Bermejo | |
| 37 | Teenage Mutant Ninja Turtles #4 Lee Bermejo Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Lee Bermejo; inks: Lee Bermejo; colors: Lee Bermejo | |
| 38 | Teenage Mutant Ninja Turtles #5 Lee Bermejo Variant Cover | cover reprint (on interior page) | 1 | pencils: Lee Bermejo; inks: Lee Bermejo; colors: Lee Bermejo | |
| 39 | Teenage Mutant Ninja Turtles #1 Khary Randolph Variant Cover | cover reprint (on interior page) | 1 | pencils: Khary Randolph; inks: Khary Randolph; colors: Emilio Lopez | |
| 40 | Teenage Mutant Ninja Turtles #1 Joëlle Jones Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Joëlle Jones; inks: Joëlle Jones; colors: Cliff Chiang | |
| 41 | Teenage Mutant Ninja Turtles #2 Rafael Albuquerque Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Rafael Albuquerque; inks: Rafael Albuquerque; colors: Rafael Albuquerque | |
| 42 | Teenage Mutant Ninja Turtles #3 Cliff Chiang Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Cliff Chiang; inks: Cliff Chiang; colors: Cliff Chiang | |
| 43 | Teenage Mutant Ninja Turtles #4 Chris Burnham Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Chris Burnham; inks: Chris Burnham; colors: Cliff Chiang | |
| 44 | Teenage Mutant Ninja Turtles #1 Peach Momoko Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Peach Momoko; inks: Peach Momoko; colors: Peach Momoko | |
| 45 | Teenage Mutant Ninja Turtles #2 Dike Ruan Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Dike Ruan; inks: Dike Ruan; colors: Dike Ruan | |
| 46 | Teenage Mutant Ninja Turtles #3 Lee Weeks Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Lee Weeks; inks: Lee Weeks; colors: Lee Weeks | |
| 47 | Teenage Mutant Ninja Turtles #4 Paolo Rivera Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Paolo Rivera; inks: Paolo Rivera; colors: Paolo Rivera | |
| 48 | Teenage Mutant Ninja Turtles #1 Matteo Scalera Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Matteo Scalera; inks: Matteo Scalera; colors: Lee Loughridge | |
| 49 | Teenage Mutant Ninja Turtles #1 Sean Murphy Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Sean Murphy; inks: Sean Murphy; colors: Sean Murphy | |
| 50 | Teenage Mutant Ninja Turtles #5 Juanjo Guarnido Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Juanjo Guarnido; inks: Juanjo Guarnido; colors: Juanjo Guarnido | |
| 51 | Teenage Mutant Ninja Turtles #6 Wes Craig Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Wes Craig; inks: Wes Craig; colors: Dee Cunniffe | |
| 52 | Teenage Mutant Ninja Turtles #1 Eric Talbot Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Eric Talbot; inks: Eric Talbot; colors: Eric Talbot | |
| 53 | Teenage Mutant Ninja Turtles #1 Aaron Campbell Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Aaron Campbell; inks: Aaron Campbell; colors: Aaron Campbell | |
| 54 | Teenage Mutant Ninja Turtles #6 Boneface Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Boneface; inks: Boneface; colors: Boneface | |
| 55 | Teenage Mutant Ninja Turtles #1 Stephanie Hans Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Stephanie Hans; inks: Stephanie Hans; colors: Stephanie Hans | |
| 56 | Teenage Mutant Ninja Turtles #5 Afu Chan Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Afu Chan; inks: Afu Chan; colors: Afu Chan | |
| 57 | Teenage Mutant Ninja Turtles #6 Carson Thorn Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Carson Thorn; inks: Carson Thorn; colors: Carson Thorn | |
| 58 | Teenage Mutant Ninja Turtles: Alpha Rod Reis Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Rod Reis; inks: Rod Reis; colors: Rod Reis | |
| 59 | Teenage Mutant Ninja Turtles #5 Danny Earls Variant Cover | cover reprint (on interior page) | 0.25 | pencils: Danny Earls; inks: Danny Earls; colors: Jão Canola | |