| 0 | - | cover | 1 | pencils: Mike Henderson; inks: Mike Henderson; colors: Mike Henderson | Shredder; Kraang |
| 1 | - | credits, title page | 3 | letters: typeset | |
| 2 | New Mutant Order, Part 1 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Cory Smith; inks: Cory Smith; colors: Ronda Pattison; letters: Shawn Lee | Oroku Saki; Krang; Alopex; Kitsune; Tragg; Granitor; Koya; Bludgeon |
| 3 | New Mutant Order, Part 2 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Ronda Pattison; letters: Shawn Lee | April O'Neil; Casey Jones; Donatello; Beth O'Neil; Genealdo; Herman the Hermit Crab; John O'Neil; Harold Lillja; Leonardo; Lindsey Baker; Maxence; Michelangelo; Mondo Gecko; Angel Bridge; Old Hob; Pigeon Pete; Raphael; Slash; Splinter |
| 4 | New Mutant Order, Part 3 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Ronda Pattison; letters: Shawn Lee | Alopex; Bebop; Herman; Leonardo; Michelangelo; Mondo Gecko; Angel Bridge; Old Hob; Raphael; Rocksteady; Splinter; Bludgeon; Casey Jones; Donatello; John O'Neil; Karai; Koya; Metalhead; Pete; Slash; Shredder |
| 5 | New Mutant Order, Part 4 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Ronda Pattison; letters: Shawn Lee | Rocksteady; Michelangelo; Raphael; Bebop; Slash; Old Hob; Herman; Leonardo; Alopex; Angel Bridge; John O'Neil; Casey Jones |
| 6 | Teenage Mutant Ninja Turtles #40 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman | |
| 7 | Teenage Mutant Ninja Turtles #37 Cover | cover reprint (on interior page) | 1 | pencils: Cory Smith; inks: Cory Smith; colors: Cory Smith | Shredder; Krang |
| 8 | Teenage Mutant Ninja Turtles #37 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman | |
| 9 | Teenage Mutant Ninja Turtles #38 Cover | cover reprint (on interior page) | 1 | pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Mateus Santolouco | Old Hob |
| 10 | Teenage Mutant Ninja Turtles #38 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman | |
| 11 | Teenage Mutant Ninja Turtles #38 Brahm Revel Variant Cover | cover reprint (on interior page) | 1 | pencils: Brahm Revel; inks: Brahm Revel | |
| 12 | Teenage Mutant Ninja Turtles #39 Cover | cover reprint (on interior page) | 1 | pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Mateus Santolouco | Slash; Bebop; Rocksteady |
| 13 | Teenage Mutant Ninja Turtles #39 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman | |
| 14 | Teenage Mutant Ninja Turtles #39 Ulises Farinas Variant Cover | cover reprint (on interior page) | 1 | pencils: Ulises Fariñas; inks: Ulises Fariñas | |
| 15 | Teenage Mutant Ninja Turtles #40 Cover | cover reprint (on interior page) | 1 | pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Mateus Santolouco | |
| 16 | Teenage Mutant Ninja Turtles #40 Buster Moody Variant Cover | cover reprint (on interior page) | 1 | pencils: Buster Moody; inks: Buster Moody | |