| 0 | - | cover | 1 | pencils: Madman!; inks: Madman! | G.I. Joe [Scarlett; Snake-Eyes; Duke] |
| 1 | - | blank page(s) | 1 | | |
| 2 | - | credits, title page | 1 | pencils: Agustín Padilla; inks: Agustín Padilla | Snake-Eyes; Storm Shadow |
| 3 | - | credits, title page | 1 | letters: typeset | |
| 4 | The Mission So Far | recap | 1 | letters: typeset | |
| 5 | - | cover reprint (on interior page) | 1 | pencils: Herb Trimpe, Agustín Padilla; inks: Bob McLeod, Agustín Padilla; colors: Glynis Wein, J. Brown; letters: Robbie Robbins; editing: Andy Schmidt | Cobra Commander; G.I Joe [Steeler; Scarlett; Zap; Flash; Stalker; Grunt] |
| 6 | - | comic story | 22 | script: Larry Hama; pencils: Agustín Padilla; inks: Agustín Padilla; colors: J. Brown; letters: Robbie Robbins; editing: Andy Schmidt | Cobra [Cobra Commander; Zartan; Destro; Baroness; Storm Shadow; Billy; Dr. Mindbender] |
| 7 | - | illustration | 1 | | |
| 8 | - | cover reprint (on interior page) | 1 | pencils: Rod Whigham; inks: Rod Whigham; colors: Andrew Crossley | Snake-Eyes; renegade red ninjas |
| 9 | Wanted | comic story | 22 | script: Larry Hama; pencils: Agustín Padilla; inks: Agustín Padilla; colors: J. Brown; letters: Robbie Robbins; editing: Andy Schmidt | G.I. Joe [Duke; Hawk; Snake-Eyes; Scarlett; Timber (Snake-Eyes's wolf); Mainframe; Roadblock; Stalker]; unnamed U.S. Army sniper (killed by Cobra sniper); several unnamed Cobra troopers (including 2 Cobra snipers); unnamed H.I.S.S. Driver; unnamed Tele-Viper; Red ninjas |
| 10 | - | cover reprint (on interior page) | 1 | pencils: Larry Hama, Agustín Padilla; inks: Agustín Padilla; colors: J. Brown | Cobra soldiers; Duke (poster); Scarlett (poster); Snake-Eyes (poster); Shipwreck (poster); Torpedo (poster); Roadblock (poster); Rock N Roll (poster); 4 more Joes with faces concealed |
| 11 | - | cover reprint (on interior page) | 1 | pencils: Rod Whigham; inks: Rod Whigham; colors: Andrew Crossley | 2 Cobra troopers; H.I.S.S. driver; H.I.S.S. gunner |
| 12 | Joes On The Run... | comic story | 22 | script: Larry Hama; pencils: Agustín Padilla; inks: Agustín Padilla; colors: J. Brown; letters: Neil Uyetake; editing: Carlos Guzman, Andy Schmidt | G.I. Joe [Snake-Eyes; Scarlett; Hawk; Duke; Rock N Roll; Stalker; Billy]; Cobra [Baroness; Storm-Shadow; Destro; Doctor Mindbender; Cobra Commander; Jugglers; Cobra troopers; H.I.S.S. driver] |
| 13 | - | cover reprint (on interior page) | 1 | pencils: Larry Hama, Agustín Padilla; inks: Agustín Padilla; colors: J. Brown | Rock N Roll |
| 14 | - | cover reprint (on interior page) | 1 | pencils: Rod Whigham; inks: Rod Whigham; colors: Andrew Crossley | Billy; Baroness |
| 15 | The Joes Strike Back | comic story | 22 | script: Larry Hama; pencils: Agustín Padilla; inks: Agustín Padilla; colors: J. Brown; letters: Neil Uyetake; editing: Carlos Guzman, Andy Schmidt | G.I. Joe [Hawk; Snake-Eyes; Scarlett; Duke; Roadblock; Rock N Roll; Stalker; Mainframe]; Billy; Cobra [Storm Shadow; Zartan; Dr. Mindbender; Cobra Commander; Destro; Baroness; B.A.T.S. units; Tele-Viper]; unnamed U.S. troops |
| 16 | - | cover reprint (on interior page) | 1 | pencils: Larry Hama, Agustín Padilla; inks: Agustín Padilla; colors: J. Brown | G.I. Joe [Snake-Eyes; Scarlett] |
| 17 | - | cover reprint (on interior page) | 1 | pencils: Rod Whigham; inks: Rod Whigham; colors: Andrew Crossley | Zartan |
| 18 | Jackpot!!! | comic story | 22 | script: Larry Hama, Carlos Guzman; pencils: Agustín Padilla; inks: Agustín Padilla; colors: J. Brown; letters: Chris Mowry; editing: Andy Schmidt | G.I. Joe [Hawk; Snake-Eyes; Scarlett; Roadblock; Duke; Mainframe; Rock N Roll; Stalker]; Cobra [Cobra Commander; Baroness; Destro; Zartan; Storm Shadow; B.A.T.S.; Cobra troopers (Pentagon sequences)]; Billy |
| 19 | - | cover reprint (on interior page) | 1 | pencils: Larry Hama, Agustín Padilla; inks: Agustín Padilla; colors: J. Brown | Destro |
| 20 | - | cover reprint (on interior page) | 1 | pencils: Rod Whigham; inks: Rod Whigham; colors: Andrew Crossley | Cobra [Dr. Venom (image on brainwave scanner); Snake-Eyes (right arm only seen strapped to scanner)] |
| 21 | Freedom!! / Enslaved!! | comic story | 22 | script: Larry Hama; pencils: Agustín Padilla; inks: Agustín Padilla; colors: J. Brown; letters: Chris Mowry; editing: Carlos Guzman, Andy Schmidt | Cobra [Snake-Eyes; Billy; Baroness (all brainwashed by Dr. Venom's brainwave scanner); Cobra Commander; Dr. Mindbender; B.A.T.S.; Destro; Dr. Venom (image on brainwave scanner); unnamed Crimson Guard (disguised as U.S. congressman); Zartan]; G.I. Joe [Hawk; Duke; Rock N Roll; Roadblock; Stalker; Mai |
| 22 | - | cover reprint (on interior page) | 1 | pencils: Larry Hama, Agustín Padilla; inks: Agustín Padilla; colors: J. Brown | Cobra [Snake-Eyes]; G.I. Joe [Storm Shadow] |
| 23 | - | cover reprint (on interior page) | 1 | pencils: Rod Whigham; inks: Rod Whigham; colors: Andrew Crossley | Hawk; Storm Shadow |
| 24 | G.I. Joe Is Back ! | comic story | 22 | script: Larry Hama; pencils: S. L. Gallant; inks: Gary Erskine; colors: J. Brown; letters: Neil Uyetake; editing: Carlos Guzman, Andy Schmidt | G.I. Joe [General Hawk; Storm Shadow; Scarlett; Lady Jaye; Clutch; Gung-Ho; Law; Order; Roadblock; Chuckles; Outback; Dusty; Spirit; Mainframe; Stalker; Slipstream; Wild Bill; Duke; Psyche-Out; Trip-Wire; Rock N Roll; Greenshirts]; Cobra [Cobra Commander; Baroness; Dr. Mindbender; Viper troopers; H. |
| 25 | - | cover reprint (on interior page) | 1 | pencils: Herb Trimpe, Larry Hama; inks: Herb Trimpe; colors: Andrew Crossley | Chuckles; Viper trooper |
| 26 | - | cover reprint (on interior page) | 1 | pencils: Rod Whigham; inks: Rod Whigham; colors: Andrew Crossley | Dreadnoks [Zartan; Torch; Ripper; Buzzer; Thrasher] |
| 27 | Homecoming Redux | comic story | 22 | script: Larry Hama; pencils: S. L. Gallant; inks: Gary Erskine; colors: J. Brown; letters: Shawn Lee; editing: Carlos Guzman, Andy Schmidt | G.I. Joe [Lady Jaye; Torpedo]; Cobra [Cobra Commander; Baroness; Destro; Snake-Eyes (brainwashed); Billy (brainwashed; possessed by Dr. Venom's memories); Dr. Mindbender; Dreadnoks [Zartan; Torch; Buzzer; Ripper; Thrasher]; Viper troopers; Techno-Vipers; Broca Beach citizens] |
| 28 | - | cover reprint (on interior page) | 1 | pencils: Herb Trimpe, Larry Hama; inks: Herb Trimpe; colors: Andrew Crossley | Lady Jaye; Baroness |
| 29 | - | cover reprint (on interior page) | 1 | pencils: Rod Whigham; inks: Rod Whigham; colors: Andrew Crossley | Cobra Commander (shooting at cardboard targets of: Roadblock; Snake-Eyes; Duke; Scarlett) |
| 30 | Entrapments And Undoings! | comic story | 22 | script: Larry Hama; pencils: S. L. Gallant, Ron Wagner; inks: Gary Erskine; colors: Andrew Crossley, Thomas Deer; letters: Shawn Lee; editing: Carlos Guzman, Andy Schmidt | G.I. Joe [Duke; Mainframe; Stalker; Scarlett; Spirit; Lady Jaye; Psyche-Out; Wild Bill; Clutch; Greenshirts]; Cobra [Cobra Commander; Billy (under the late Dr. Venom's mental control via the brainwave scanner); Destro; Baroness (captured by the Joes); Dreadnoks [Zartan; Ripper; Buzzer; Torch]; Tele- |
| 31 | - | cover reprint (on interior page) | 1 | pencils: Larry Hama, Herb Trimpe; inks: Herb Trimpe; colors: J. Brown | G.I. Joe [Roadblock; Lady Jaye; Timber the wolf] |
| 32 | - | cover reprint (on interior page) | 1 | pencils: Rod Whigham; inks: Rod Whigham; colors: Andrew Crossley | Dr. Mindbender (background); Cobra B.A.T.S.(Battle Android Troopers) |
| 33 | Broken Illusions And Escapes | comic story | 22 | script: Larry Hama; pencils: S. L. Gallant; inks: Gary Erskine; colors: J. Brown; letters: Shawn Lee; editing: Carlos Guzman | G.I.Joe [Duke; Snake-Eyes (freed this issue); Psyche-Out; Stalker; Mainframe; Spirit (as Spirit Iron-Knife); Sneak Peek; Ace]; Storm Shadow; Cobra [Cobra Commander; Dr. Mindbender; Baroness (freed this issue); Destro; Dreadnoks [Zartan; Ripper; Buzzer; Torch; Thrasher]; Tele-Vipers; B.A.T.S. (Battle |
| 34 | - | cover reprint (on interior page) | 1 | pencils: Herb Trimpe, Larry Hama; inks: Herb Trimpe; colors: Andrew Crossley | Snake-Eyes; Storm Shadow |
| 35 | - | cover reprint (on interior page) | 1 | pencils: Rod Whigham; inks: Rod Whigham; colors: Andrew Crossley | Dr. Venom (image); Billy |
| 36 | Shocks and Rockets!!! | comic story | 22 | script: Larry Hama; pencils: S. L. Gallant; inks: Gary Erskine; colors: J. Brown; letters: Shawn Lee | G.I Joe [Snake-Eyes; Ace; Stalker; Tripwire;Tunnel Rat; Spirit Iron-Knife; Duke; Mainframe]; Storm Shadow; Billy (freed from Dr. Venom's control); Kwinn (image inside brainwave scanner); Cobra [Dr. Mindbender; Wild Weasel; Viper trooper; B.A.T.S. (damaged); Dr. Venom (images from brainwave scanner)] |
| 37 | - | cover reprint (on interior page) | 1 | pencils: Herb Trimpe, Larry Hama; inks: Herb Trimpe; colors: Andrew Crossley | Ace; Wild Weasel |
| 38 | - | promo (ad from the publisher) | 1 | pencils: various; inks: various; colors: various; letters: typeset | |
| 39 | - | blank page(s) | 1 | | |
| 40 | - | foreword, introduction, preface, afterword | 1 | letters: typeset | |