| 0 | - | cover | 1 | pencils: James Jean; inks: James Jean; colors: James Jean | |
| 1 | What Has Come Before | recap | 1 | letters: typeset | |
| 2 | Strangers in Paradise | comic story | 17 | script: Bruce Jones; pencils: Eddy Barrows; inks: Jay Leisten; colors: Lee Loughridge; letters: Nick J. Napolitano | Batman [Bruce Wayne] (flashback); Nightwing [Dick Grayson] (flashback); Ezra Brownian; Red Hood [Jason Todd] (villain, flashback); David Sutabi (villain); Black Mask [Roman Sionis] (villain); Two-Face [Harvey Dent] (villain, flashback); Hush (villain, flashback); Tarantula [Catalina Flores] (villain |
| 3 | Street Crime | comic story | 5 | script: Will Pfeifer; pencils: Ron Randall; inks: Ron Randall; colors: Brad Anderson; letters: Phil Balsman | Commissioner Akins; Mayor; Killer Croc; Catwoman (Cameo) |
| 4 | Taking Sides | comic story | 8 | script: Andersen Gabrych; pencils: Tom Derenick; inks: Ray Snyder; colors: Gregory Wright; letters: Jared K. Fletcher | Robin [Tim Drake]; Batgirl [Cassandra Cain] |
| 5 | War Crimes, Part 1: To the Victor Go the Spoils | comic story | 22 | script: Andersen Gabrych; pencils: Pete Woods; inks: BIT; colors: Jason Wright; letters: Rob Leigh | Batman [Bruce Wayne]; Alfred Pennyworth; Arturo Rodriguez; Stephanie Brown [Spoiler; Robin] (flashback; deceased); Nurse Jenkins; Vera Desares (deceased); Alex Kosov (villain); Joker (villain); Arthur Brown [as Aaron Black; Cluemaster] (villain); Batman [Black Mask in disguise; Roman Sionis] (villai |
| 6 | War Crimes, Part 2: Minor Discrepancies | comic story | 22 | script: Bill Willingham; pencils: Giuseppe Camuncoli; inks: Sandra Hope; colors: Jason Wright; letters: Pat Brosseau | Batman [Bruce Wayne]; Alfred Pennyworth; Commissioner Michael Akins; Winona Chen; Arturo Rodriguez; Agnes Crystal Bellinger-Brown; Joker; Aaron Black [Arthur Brown; Cluemaster]; Black Mask [Roman Sionis] |
| 7 | War Crimes, Part 3: A Consequence of Truth | comic story | 22 | script: Andersen Gabrych; pencils: Pete Woods; inks: BIT; colors: Jason Wright; letters: Rob Leigh | Batman [Bruce Wayne]; Alfred Pennyworth; Arturo Rodriguez; Ms. Chen; Crystal Brown; Joker (villain); Arthur Brown [as Aaron Black; Cluemaster] (villain); Black Mask [Roman Sionis; also as Batman] (villain) |
| 8 | War Crimes, Part 4: Judgment at Gotham | comic story | 22 | script: Bill Willingham; pencils: Giuseppe Camuncoli; inks: Sandra Hope; colors: Jason Wright; letters: Jared K. Fletcher | Batman [Bruce Wayne]; Alfred Pennyworth; Leslie Thompkins; Winona Chen; Danny Fox; Arturo Rodriguez; Agnes Crystal Bellinger-Brown; Joker; Black Mask [Roman Sionis]; Alexandra Kosov |
| 9 | - | cover reprint (on interior page) | 1 | pencils: Jock; inks: Jock; colors: Jock | Robin [Stephanie Brown] |
| 10 | - | cover reprint (on interior page) | 1 | pencils: Jock; inks: Jock; colors: Jock | Joker |
| 11 | - | cover reprint (on interior page) | 1 | pencils: Jock; inks: Jock; colors: Jock | Cluemaster [Arthur Brown] |
| 12 | - | cover reprint (on interior page) | 1 | pencils: Jock; inks: Jock; colors: Jock | Black Mask |