| 0 | - | cover | 1 | pencils: Dale Eaglesham; inks: Sean Parsons | Batman; Robin [Tim Drake]; Nightwing; Huntress; Batgirl [Cassandra Cain] |
| 1 | The King | comic story | 22 | script: Ian Edginton; pencils: Jason Minor; inks: Sal Buscema; colors: Pam Rambo, Digital Chameleon; letters: Albert T. De Guzman | Batman [Bruce Wayne]; Jess; The King [Stanley Demchaszky]; Killer Croc [Waylon Jones] (villain); Penguin [Oswald Cobblepot] (villain) |
| 2 | I Cover the Waterfront | comic story | 22 | script: Janet Harvey; pencils: Sergio Cariello; inks: Matt Ryan; colors: Pamela Rambo; letters: Todd Klein | Batgirl [Cassandra Cain]; Batman; Nightwing; Oracle [Barbara Gordon]; Sanchez |
| 3 | Homecoming | comic story | 22 | script: Larry Hama; pencils: Mike Deodato; inks: Sean Parsons; colors: Pamela Rambo; letters: Willie Schubert | Batman; Bane |
| 4 | War Beneath the Streets! Part One: Rats! | comic story | 22 | script: Chuck Dixon; pencils: Staz Johnson; inks: Wayne Faucher; colors: Adrienne Roy; letters: Tim Harkins | Robin [Tim Drake]; Batman [Bruce Wayne]; Tommy Mangles; Gearhead; Ratcatcher; Stephanie Brown [Spoiler] |
| 5 | War Beneath the Streets! Part Two: Wolflings | comic story | 22 | script: Chuck Dixon; pencils: Staz Johnson; inks: Wayne Faucher; colors: Adrienne Roy; letters: Tim Harkins | Robin [Tim Drake]; Ratcatcher; Stephanie Brown [Spoiler]; Tommy Mangles; Gearhead; Mr. Freeze [Victor Fries] (last page cameo) |
| 6 | War Beneath the Streets! Part Three: The Survivors | comic story | 22 | script: Chuck Dixon; pencils: Gordon Purcell; inks: Wayne Faucher; colors: Adrienne Roy; letters: Tim Harkins | Robin [Tim Drake]; Batman [Bruce Wayne]; Mr. Freeze [Victor Fries]; Gearhead; Ratcatcher; Batgirl [Cassandra Cain] |
| 7 | Ghosts | comic story | 22 | script: Denny O'Neil; pencils: Roger Robinson; inks: James Pascoe; colors: Rob Ro, Alex Bleyaert; letters: Ken Bruzenak | Azrael; Leslie Thompkins |
| 8 | "...Where the Lights Are Burning Low." | comic story | 22 | script: Larry Hama; pencils: Paul Gulacy; inks: Randy Emberlin; colors: Felix Serrano, Wildstorm FX; letters: Willie Schubert | Batman; Lynx |
| 9 | Positive Role Model | comic story | 22 | script: Larry Hama; pencils: Paul Gulacy; inks: Randy Emberlin; colors: Felix Serrano; letters: Willie Schubert | Batman; Mei (dies); Lynx (villain); Jade Faced Wu (villain, dies); The Fists of Heavenly Serendipity (villains); Bane (villain) |
| 10 | The Code, Part One: Breaking the Law | comic story | 22 | script: Bronwyn Carlton; pencils: Mike Deodato; inks: David Roach; colors: Pam Rambo, Wildstorm FX; letters: John Costanza | Batman; Joker (villain); Harley Quinn (villain); Oracle [Barbara Gordon]; Huntress (last page cameo) |
| 11 | The Code, Part 2 | comic story | 22 | script: Bronwyn Carlton; pencils: Tom Morgan; inks: David Roach; colors: Pamela Rambo, Wildstorm FX; letters: John Costanza | Batman; Joker (Villain); Harley Quinn (Villain); Huntress (Guest Star); Oracle [Barbara Gordon] (Cameo); Officer Pettit |
| 12 | Underground Railroad, Part One | comic story | 22 | script: Steven Barnes; pencils: Paul Ryan; inks: Andy Lanning; colors: Gloria Vasquez, Wildstorm FX; letters: John Costanza | Batman; Hardback; Penguin; Joker (cameo) |
| 13 | Underground Railroad, Part II | comic story | 22 | script: Steven Barnes; pencils: Paul Ryan; inks: Andy Lanning; colors: Gloria Vasquez, Wildstorm FX; letters: John Costanza | Robin [Tim Drake]; Vanessa; Hardback [Mackenzie Bock]; Skeeter; Tubman; Penguin [Oswald Cobblepot] (villain); Angel (villain) |
| 14 | Goin' Downtown, Part One: The Vault | comic story | 22 | script: Chuck Dixon; pencils: Mat Broome; inks: Sean Parsons; colors: Gloria Vasquez, Wildstorm FX; letters: John Costanza | Batman; Bane (villain); Penguin (villain); Two-Face (villain); Robin [Tim Drake] |
| 15 | Goin' Downtown, Part Two: The Vandal | comic story | 22 | script: Chuck Dixon; pencils: Mat Broome; inks: Sean Parsons; colors: Gloria Vasquez, Wildstorm FX; letters: John Costanza | Batman; Robin [Tim Drake]; Two-Face (villain); Bane (villain); Penguin (cameo); Oracle [Barbara Gordon]; Batgirl [Cassandra Cain] |
| 16 | Captain of Industry | comic story | 22 | script: Chuck Dixon; pencils: Rafael Kayanan; inks: Mark McKenna; colors: Pamela Rambo, Wildstorm FX; letters: Bill Oakley | Batman |
| 17 | Stormy Weather | comic story | 22 | script: Devin K. Grayson; pencils: Dale Eaglesham; inks: John Floyd; colors: Jason Wright, Wildstorm FX; letters: John Costanza | Batman [Bruce Wayne]; Superman [Clark Kent; Kal-El]; Batgirl [Cassandra Cain]; Officer Pettit; Staff Sgt. Miller; James Wendel; Blue Boys |
| 18 | The Message | comic story | 22 | script: Alisa Kwitney; pencils: Michael Zulli; inks: Vince Locke; colors: Noelle Giddings, Digital Chameleon; letters: Willie Schubert | Oracle [Barbara Gordon]; Huntress [Helena Bertinelli]; Jason Braun; Lolita; Quentin; Peabody; Penguin [Oswald Cobblepot]; Poison Ivy [Pamela Isley]; Two-Face [Harvey Dent] |
| 19 | The Lizard King | comic story | 22 | script: Chuck Dixon; pencils: Staz Johnson; inks: Wayne Faucher; colors: Adrienne Roy; letters: Tim Harkins | Robin [Tim Drake]; Killer Croc [Waylon Jones]; Alfred Pennyworth; Jack Drake; Dana Winters; Richard Grayson [Nightwing]; Oracle [Barbara Gordon]; Penguin [Oswald Cobblepot]; Stephanie Brown [Spoiler]; Harvey Bullock; Renee Montoya |
| 20 | Last Stand on Grand Ave | comic story | 22 | script: Chuck Dixon; pencils: Gordon Purcell; inks: Wayne Faucher; colors: Adrienne Roy; letters: Tim Harkins | Robin [Tim Drake]; Killer Croc [Waylon Jones]; Penguin [Oswald Cobblepot]; Alfred Pennyworth; Stephanie Brown [Spoiler]; Batman [Bruce Wayne]; Harvey Bullock; Renee Montoya; Jack Drake; Dana Winters |
| 21 | - | cover reprint (on interior page) | 1 | pencils: Mat Broome; inks: Sean Parsons | Batman; Killer Croc |
| 22 | - | cover reprint (on interior page) | 1 | pencils: Phil Jimenez; inks: Phil Jimenez | Batgirl [Cassandra Cain] |
| 23 | - | cover reprint (on interior page) | 1 | pencils: John Cassaday; inks: John Cassaday | Batman; Bane |
| 24 | - | cover reprint (on interior page) | 1 | pencils: Jason Pearson; inks: Jason Pearson | Robin [Tim Drake] |
| 25 | - | cover reprint (on interior page) | 1 | pencils: Jason Pearson; inks: Jason Pearson | Robin [Tim Drake] |
| 26 | - | cover reprint (on interior page) | 1 | pencils: Jason Pearson; inks: Jason Pearson | Robin [Tim Drake]; Mr. Freeze [Victor Fries] |
| 27 | - | cover reprint (on interior page) | 1 | pencils: Roger Robinson; inks: James Pascoe; colors: Robert Ro, Alex Bleyaert | Azrael |
| 28 | - | cover reprint (on interior page) | 1 | pencils: Tony Harris; inks: Tony Harris | Batman; Lynx |
| 29 | - | cover reprint (on interior page) | 1 | pencils: Tony Harris; inks: Ray Snyder | Batman; Lynx |
| 30 | - | cover reprint (on interior page) | 1 | pencils: Rodolfo Damaggio; inks: Rodolfo Damaggio | Joker |
| 31 | - | cover reprint (on interior page) | 1 | pencils: Rodolfo Damaggio; inks: Rodolfo Damaggio; colors: Patrick Martin | Joker; Huntress; Harley Quinn |
| 32 | - | cover reprint (on interior page) | 1 | pencils: Bill Sienkiewicz; inks: Bill Sienkiewicz; colors: Bill Sienkiewicz | Batman |
| 33 | - | cover reprint (on interior page) | 1 | pencils: Bill Sienkiewicz; inks: Bill Sienkiewicz; colors: Bill Sienkiewicz | Penguin |
| 34 | - | cover reprint (on interior page) | 1 | pencils: Mat Broome; inks: Sean Parsons; colors: Patrick Martin | Bane |
| 35 | - | cover reprint (on interior page) | 1 | pencils: Mat Broome; inks: Sean Parsons | Batman; Bane |
| 36 | - | cover reprint (on interior page) | 1 | pencils: Jordan Raskin; inks: Jordan Raskin | Batman |
| 37 | - | cover reprint (on interior page) | 1 | pencils: Scott McDaniel; inks: Klaus Janson; colors: Patrick Martin | Batman; Superman; Officer Pettit |
| 38 | - | cover reprint (on interior page) | 1 | pencils: Alex Maleev; inks: Alex Maleev; colors: Digital Chameleon | Batman; Huntress; Batgirl [Cassandra Cain]; Two-Face; Joker; Penguin |
| 39 | - | cover reprint (on interior page) | 1 | pencils: Rick Burchett; inks: Rick Burchett; colors: Patrick Martin | Killer Croc [Waylon Jones] |
| 40 | - | cover reprint (on interior page) | 1 | pencils: Jason Pearson; inks: Jason Pearson; colors: Jason Pearson | Robin [Tim Drake]; Killer Croc [Waylon Jones] |
| 41 | Bruce Wayne | character profile | 1 | script: Jordan Gorfinkel; pencils: Graham Nolan; inks: Graham Nolan; colors: Tom McCraw, Digital Chameleon | Bruce Wayne [Batman] |
| 42 | Batsquad | character profile | 2 | script: Jordan Gorfinkel; pencils: Damion Scott; inks: John Floyd; colors: Tom McCraw, Digital Chameleon | Batman [Bruce Wayne]; Nightwing [Dick Grayson]; Robin [Tim Drake]; Azrael [Jean Paul Valley]; Oracle [Barbara Gordon]; Batgirl [Cassandra Cain] |
| 43 | Blue Boys | character profile | 2 | script: Jordan Gorfinkel; pencils: Paul Ryan; inks: John Stanisci; colors: Tom McCraw, Digital Chameleon | James Gordon; Billy Pettit; Renee Montoya; Mackenzie "Hardback" Bock; Clarence Foley; Sarah Essen-Gordon; Harvey Bullock |
| 44 | Azrael | character profile | 1 | script: Dennis O'Neil; pencils: Roger Robinson; inks: James Pascoe; colors: Tom McCraw, Digital Chameleon | Azrael [Jean Paul Valley] |
| 45 | Batgirl | character profile | 1 | script: Kelley Puckett; pencils: Damion Scott; inks: Robert Campanella; colors: Tom McCraw, Digital Chameleon | Batgirl [Cassandra Cain] |
| 46 | The Penguin | character profile | 1 | script: Jordan Gorfinkel; pencils: Graham Nolan; inks: Graham Nolan; colors: Tom McCraw, Digital Chameleon | Penguin [Oswald Cobblepot] |
| 47 | Poison Ivy | character profile | 1 | script: Jordan Gorfinkel; pencils: Yvel Guichet; inks: Aaron Sowd; colors: Tom McCraw, Digital Chameleon | Poison Ivy [Pamela Isley] |
| 48 | Cain | character profile | 1 | script: Kelley Puckett; pencils: Damion Scott; inks: Robert Campanella; colors: Tom McCraw, Digital Chameleon | David Cain |
| 49 | Harley Quinn | character profile | 1 | script: Scott Beatty; pencils: Yvel Guichet; inks: Aaron Sowd; colors: Tom McCraw, Digital Chameleon | Harley Quinn [Harleen Quinzel] |
| 50 | Outside Interest | character profile | 1 | script: Jordan Gorfinkel; pencils: Germán García; inks: John Dell; colors: Tom McCraw, Digital Chameleon | Bane |