| 0 | Usagi and Jei | cover | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Stan Sakai | Jei, Miyamoto Usagi |
| 1 | White | blank page(s) | 1 | | |
| 2 | Half Title Page | credits, title page | 1 | letters: typeset | |
| 3 | Full Title Page | credits, title page | 2 | pencils: Stan Sakai; inks: Stan Sakai | Miyamoto Usagi |
| 4 | Copyright Page | statement of ownership | 1 | letters: typeset | |
| 5 | Dedication Page | foreword, introduction, preface, afterword | 1 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai | Miyamoto Usagi |
| 6 | Contents | text article | 2 | letters: typeset | |
| 7 | Cast of Characters | character profile | 1 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai | Miyamoto Usagi |
| 8 | Seasons | credits, title page | 1 | letters: typeset | |
| 9 | Stan's Other Self | foreword, introduction, preface, afterword | 1 | script: Lynn Johnston; pencils: Lynn Johnston; inks: Lynn Johnston | Lynn Johnston |
| 10 | Return To Adachi Plain | comic story | 8 | script: Stan Sakai; pencils: Stan Sakai; inks: Sergio Aragonés; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 11 | The Withered Field | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 12 | A Promise In The Snow | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 13 | The Conspiracy of Eight | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Chizu |
| 14 | Snakes and Blossoms | comic story | 11 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 15 | The Courage of the Plum | comic story | 5 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai | Katsuichi, Miyamoto Usagi |
| 16 | The Crossing | comic story | 8 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Jei |
| 17 | The Patience of the Spider | comic story | 8 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 18 | The Lord of Owls | comic story | 12 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 19 | The First Tenet | comic story | 12 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 20 | The Obakeneko of the Geishu Clan | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Murakami Gennosuke, Tomoe Ame |
| 21 | Green Persimmon | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; letters: Stan Sakai; editing: Jamie S. Rich | Lord Noriyuki, Tomoe Ame |
| 22 | Grasscutter | credits, title page | 1 | letters: typeset | |
| 23 | American Komikkusu | foreword, introduction, preface, afterword | 1 | script: Will Eisner | |
| 24 | Prologue 1: Izanagi & Izanami | comic story | 7 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 25 | Prologue 2: Susano-o | comic story | 9 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 26 | Prologue 3: Yamato-Dake | comic story | 8 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 27 | Prologue 4: Dan-no-ura | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 28 | Chapter 1: Jei | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Murakami Gennosuke, Jei, Lord Noriyuki, Tomoe Ame |
| 29 | Chapter 2: Heike Gani | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Murakami Gennosuke, Jei |
| 30 | Chapter 3: Inazuma | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Murakami Gennosuke, Jei, Lord Noriyuki, Tomoe Ame |
| 31 | Chapter 4: Noriyuki and Tomoe | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Murakami Gennosuke, Jei, Lord Noriyuki, Tomoe Ame |
| 32 | Chapter 5: Ikeda | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Murakami Gennosuke, Jei, Lord Noriyuki, Tomoe Ame |
| 33 | Chapter 6: Tomoe and Ikeda | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Murakami Gennosuke, Jei, Lord Noriyuki, Tomoe Ame |
| 34 | Chapter 7: Usagi and Jei | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Murakami Gennosuke, Jei, Lord Noriyuki, Tomoe Ame |
| 35 | Chapter 8: Sanshobo | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Jamie S. Rich | Murakami Gennosuke, Jei, Lord Noriyuki, Tomoe Ame |
| 36 | Grey Shadows | credits, title page | 1 | letters: typeset | |
| 37 | The Case of Usagi Yojimbo | foreword, introduction, preface, afterword | 1 | script: Max Allan Collins, Nathan Collins | |
| 38 | My Father's Swords | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Diana Schutz | Murakami Gennosuke |
| 39 | The Demon Flute | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Diana Schutz | Miyamoto Usagi |
| 40 | Momo-Usagi-Taro | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Diana Schutz | Miyamoto Usagi |
| 41 | The Hairpin Murders | comic story | 48 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Diana Schutz | Inspector Ishida, Miyamoto Usagi |
| 42 | The Courtesan | comic story | 48 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Diana Schutz | Miyamoto Usagi |
| 43 | Tameshigiri | comic story | 24 | script: Stan Sakai; pencils: Stan Sakai; inks: Stan Sakai; letters: Stan Sakai; editing: Diana Schutz | Inspector Ishida, Miyamoto Usagi |
| 44 | Story Notes | text article | 10 | script: Stan Sakai | |
| 45 | Usagi Yojimbo Volume Three #7 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 46 | Usagi Yojimbo Volume Three #8 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 47 | Usagi Yojimbo Volume Three #9 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 48 | The Art of Usagi Yojimbo #1 | cover reprint (on interior page) | 2 | pencils: Stan Sakai; inks: Stan Sakai; colors: Pat Duke | Miyamoto Usagi |
| 49 | Usagi Yojimbo Volume Three #10 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Stan Sakai; editing: Jamie S. Rich | Miyamoto Usagi |
| 50 | Usagi Yojimbo Volume Three #11 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 51 | Usagi Yojimbo Volume Three #12 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 52 | Usagi Yojimbo Color Special #4 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 53 | Usagi Yojimbo Volume Three #13 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 54 | Usagi Yojimbo Volume Three #14 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 55 | Usagi Yojimbo Volume Three #15 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 56 | Usagi Yojimbo Volume Three #16 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 57 | Usagi Yojimbo Volume Three #17 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 58 | Usagi Yojimbo Volume Three #18 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 59 | Usagi Yojimbo Volume Three #19 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 60 | Usagi Yojimbo Volume Three #20 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 61 | Usagi Yojimbo Volume Three #21 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Jamie S. Rich | Miyamoto Usagi |
| 62 | Usagi Yojimbo Volume Three #22 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Diana Schutz | Miyamoto Usagi |
| 63 | Usagi Yojimbo Volume Three #23 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Diana Schutz | Miyamoto Usagi |
| 64 | Usagi Yojimbo Volume Three #24 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Diana Schutz | Miyamoto Usagi |
| 65 | Usagi Yojimbo Volume Three #25 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Diana Schutz | Miyamoto Usagi |
| 66 | Usagi Yojimbo Volume Three #26 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Diana Schutz | Miyamoto Usagi |
| 67 | Usagi Yojimbo Volume Three #27 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Diana Schutz | Miyamoto Usagi |
| 68 | Usagi Yojimbo Volume Three #28 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Diana Schutz | Miyamoto Usagi |
| 69 | Usagi Yojimbo Volume Three #29 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Diana Schutz | Miyamoto Usagi |
| 70 | Usagi Yojimbo Volume Three #30 | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Tom Luth; editing: Diana Schutz | Miyamoto Usagi |
| 71 | Usagi Yojimbo Book 11- Seasons | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Stan Sakai; editing: Diana Schutz | Miyamoto Usagi |
| 72 | Usagi Yojimbo Book 12- Grasscutter | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Stan Sakai; editing: Diana Schutz | Murakami Gennosuke, Jei, Miyamoto Usagi, Tomoe Ame |
| 73 | Usagi Yojimbo Book 13- Grey Shadows | cover reprint (on interior page) | 1 | pencils: Stan Sakai; inks: Stan Sakai; colors: Stan Sakai; editing: Diana Schutz | Inspector Ishida, Miyamoto Usagi |
| 74 | About the Author | text article | 1 | pencils: Sharon Sakai | |
| 75 | Dark Horse Comics, Inc. | credits, title page | 1 | pencils: Stan Sakai; inks: Stan Sakai | Miyamoto Usagi |
| 76 | Usagi Yojimbo | promo (ad from the publisher) | 1 | pencils: Stan Sakai; inks: Stan Sakai | Miyamoto Usagi |
| 77 | Back Cover | text article | 1 | letters: typeset | |