| 0 | - | cover | 1 | pencils: Sean Phillips; inks: Sean Phillips; colors: Sean Phillips | |
| 1 | Title Page | credits, title page | 1 | letters: typeset | |
| 2 | Title Page and Credits | credits, title page | 2 | letters: typeset | |
| 3 | Copyright Page | credits, title page | 1 | letters: typeset | |
| 4 | Table of Contents | table of contents | 1 | letters: typeset | |
| 5 | Part 1: The Book of Crews | credits, title page | 2 | | |
| 6 | - | illustration | 1 | | |
| 7 | The Book of Crews | comic story | 24 | script: Andrew Vachss, Mike Richardson; pencils: Dominic Reardon; inks: Dominic Reardon; colors: Jeremy Colwell; letters: Nate Piekos of Blambot | |
| 8 | Part 2: The Charter's Tale | credits, title page | 2 | | |
| 10 | The Charter's Tale | comic story | 16 | script: Andrew Vachss, Chet Williamson; pencils: Dominic Reardon; inks: Dominic Reardon; colors: Jeremy Colwell; letters: Nate Piekos of Blambot | |
| 11 | Part 3: The Book of Obligations | credits, title page | 2 | | |
| 13 | The Book of Obligations | comic story | 26 | script: Andrew Vachss, Chet Williamson; pencils: Dominic Reardon; inks: Dominic Reardon; colors: Jeremy Colwell; letters: Nate Piekos of Blambot | |
| 14 | Part 4: The Book of Connection | credits, title page | 2 | | |
| 16 | The Book of Connection | comic story | 10 | script: Andrew Vachss, Chet Williamson; pencils: Dominic Reardon; inks: Dominic Reardon; colors: Jeremy Colwell; letters: Nate Piekos of Blambot | |
| 17 | Part 5: The Book of Mission | credits, title page | 2 | | |
| 19 | The Book of Mission | comic story | 8 | script: Andrew Vachss, Chet Williamson; pencils: Dominic Reardon; inks: Dominic Reardon; colors: Jeremy Colwell; letters: Nate Piekos of Blambot | |
| 20 | Part 6: The Book of Revelations and Transformations | credits, title page | 2 | | |
| 22 | The Book of Revelations and Transformations | comic story | 18 | script: Andrew Vachss, Chet Williamson; pencils: Dominic Reardon; inks: Keith Champagne; colors: Jeremy Colwell; letters: Nate Piekos of Blambot | |
| 23 | Part 7: The Book of Mind | credits, title page | 2 | | |
| 25 | The Book of Mind | comic story | 10 | script: Andrew Vachss, Chet Williamson; pencils: Dominic Reardon; inks: Keith Champagne; colors: Jeremy Colwell; letters: Nate Piekos of Blambot | |
| 26 | Part 8: The Book of the Path | credits, title page | 2 | | |
| 28 | The Book of the Path | comic story | 28 | script: Andrew Vachss, Chet Williamson; pencils: Dominic Reardon; inks: Keith Champagne; colors: Jeremy Colwell; letters: Nate Piekos of Blambot | |
| 29 | - | illustration | 1 | | |
| 30 | Creator Biographies | text article | 4 | pencils: Dominic Reardon; inks: Dominic Reardon | |
| 32 | Leaving the Underground | foreword, introduction, preface, afterword | 3 | script: Zak Mucha (credited); letters: typeset | |
| 33 | Company Credits | credits, title page | 1 | letters: typeset | |
| 34 | - | illustration | 1 | | |
| 35 | Back Cover | promo (ad from the publisher) | 1 | pencils: Dom Reardon; inks: Dom Reardon; colors: Jeremy Colwell | |